Panzer, K. et al. Identification of habitat-specific biomes of aquatic fungal communities using a comprehensive nearly full-length 18S rRNA dataset enriched with contextual data.
In order to evaluate the chord recognition performance based on the given chroma feature sets, in this case, a threefold cross validation was accomplished on the commonly used Beatles dataset enriched with 38 songs of Queen and Zweieck.
An in silico approach intended to identify possible host interacting proteins yields a dataset enriched in secretory/transmembrane proteins, including most of the antigens known to be engaged by apicomplexan parasites during infection.
A dataset enriched in FD-mapping PE reads was submitted to Sequence Read Archive (SRA) (http://www.ebi.ac.uk/ena/data/view/PRJEB6982).ac.uk/ena/data/view/PRJEB6982
This restricted dataset, enriched in differentially expressed genes, was suited to run a multiclass comparison method of Significance Analysis of Microarrays (SAM), with false discovery rate =0.15% [ 13].
This tool, consisting on an article filter followed by a sentence filter, has been trained on the BioCreAtIvE II workshop dataset, enriched by other selected known-interactions.
To avoid a bias due to the heterogeneous composition of our gene dataset (enriched in stress related genes, see above), we inferred the preferred codons only from genes annotated as ribosomal (n = 77), which, being highly expressed, should be enriched in optimal codons.
Of course, if a condition was established in the early stages of the pipeline that a match would be considered a match only if involved kingdoms that split a long time ago, I would expect to have my dataset enriched with ancient proteins.
We expected to find that datasets enriched with D-MIAT provide more accurate results than those without it, and more generally removing the original features in favor of exclusively using the discretized ones would be less effective than using the combination of features in one extended set.
As stated above, both recurrent cancer mutations and mutations in cancer genes have been employed elsewhere as datasets enriched in driver mutations.
