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The dataset composition is described in Table 1.
Except the classification of M1 agonists, recall values were not much influenced by changes in dataset composition.
Interestingly, the influence of differences in dataset composition resulting from various ways of selection of molecules forming a set of inactives has never been thoroughly investigated.
As a first step, an experimental setup was developed that isolated dataset composition as the sole factor of variance influencing VS performance.
The goal of this study was to assess whether or not commonly employed measures of diversity reasonably characterize benchmark dataset composition.
Our dataset composition seems to be more similar to the floristic composition in the primary dipterocarp forests, with a percentage of total trees of about 25% (Sist and Saridan 1999).
Similar(45)
Although alternative variant calling procedures can result in different number of variants, the consistency of our datasets composition (Supplementary Table S1), in terms of total SNVs, PDVs and PIGs, makes us confident about the average quality of nsSNVs used in our analysis.
Two classes of methods exist for estimating microbial community abundance from metagenomic datasets: composition-based and identity-based methods.
A total of 6.1% of the total variation in the dataset (microbiota composition at genus-like level) could be related to the environmental variables (age-groups).
We created a simulated NGS metagenome dataset (simArt49e, composition in Supplementary Fig. S10) for our evaluation.
From metagenomic datasets, community compositions and metabolic functions can be examined.
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