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In this paper, we use the face with ID F0001_NE00 of BU-3DFE dataset as reference.
Different merging algorithms for total as well as vertically resolved ozone rely on (a) inter-satellite calibration, i.e. using one dataset as reference standard [20 23], (b) ground-based measurements as reference data [24, 25], (c) data assimilation techniques [26, 27] and (d) optimum interpolation [28].
In order to make such assignments, we selected 29 samples from the dataset as reference populations (as population marker, PM).
Using this dataset as reference, we have identified small panels of SNPs that can be used to successfully assign unknown cattle samples to one of 19 worldwide breeds.
this protocol uses the CAGE dataset as reference.
However, in principle, we can use a general dataset of genes (e.g. microbial genes in the NCBI nr dataset) as reference genes in GeneStitch, if we have no prior knowledge of the taxonomic composition of a metagenomic sample.
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In this method, suitable and available reference species are selected from the NCBI taxonomy tree and the Ensembl and KEGG databases instead of either choosing only one model species or adopting the NCBI non-redundant dataset as references.
Availability: Alignment of up to 500 sequences using the latest SILVA SSU/LSU Ref datasets as reference MSA is offered at http://www.arb-silva.de/aligner.
The list of the specific 500 datasets used as reference datasets in the study of Kim and Park were not able to be reconstructed from the current 1400 arrays simply because the information was not available (personal communication with the authors).
We also geocoded the data in-house with the geocoding tools in ESRI ArcView version 9.3 (Redlands, CA) using the ESRI StreetMap Premium North America NAVTEQ 2008 enhanced street dataset as the reference address locator.
Our primary goal is the identification of small panels of AIMs that achieve accurate assignment of individuals to breeds, using the reported ancestral breeds in the Bovine HapMap dataset [19] as reference.
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