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Linkage between the databases was achieved as illustrated in Figure 1.
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These results indicate the best performance of the DFT methods for the three databases are achieved by DFT3 and DFT7.
Determining the total number of transcripts classified according to first tier terms of the three main domains of the GO database was achieved using a Perl script querying the Blast2go MySQL term tables.
The sample database is achieved by practical experiments and numerical simulations.
In [39], the more promising performances on PFID database are achieved, which use statistics of pairwise local features.
The communication between server and the database is achieved using Java Database Connectivity API (JDBC).
The construction of a Gap5 database is achieved using the separate tg_index tool.
Multiple alignments of gatB and GlnRS sequences in the database were achieved by MUSCLE using default parameters [ 51].
The interface within the dot plot viewer and the annotation viewer was implemented using Google Maps API version 2. Interpretation of biological data and interactive entry fetching from public database were achieved by the BioRuby library (http://bioruby.org/) and the TogoWS system.
In Novartis, Sloan Kettering and University of Tokyo siRNA databases, gene down regulation was achieved through siRNA oligonucleotide transfection and the remaining protein levels were evaluated through fluorescence measurement of reporter gene output.
In NCBI database gene down regulation was achieved through siRNA oligonucleotide transfection and the remaining RNA or protein levels were evaluated by different assays.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com