Sentence examples for database were plotted from inspiring English sources
Normalized best tBLASTx similarities to the phage database were plotted against the Phage Proteomic Tree version 4 (http://phage.sdsu.edu/~rob/PhageTree/v4) using Bio-Metamapper [53], [56].
Also, NCLDV core genes, ORFs corresponding to COGs and NCVOGs, duplicated genes, ORFans and meta-ORFans, and ORFs classified on the basis of the taxonomy of their best BLASTp hits in the NCBI non-redundant protein sequence database were plotted according to their position on the genome.
To get a snapshot of the SNP distribution across the catfish genome, SNP- containing contigs with BLAST hits to the Ensembl zebrafish transcripts database were plotted along the zebrafish chromosomes.
Note that results related to one image from each database are plotted since results of other images are similar.
In the example bubble plots (Figs. 3 and 4), studies in the LCS evidence-map database are plotted into two-dimensional grids according to outcome categories and study characteristics such as intervention duration, intervention type, or population health status.
The percentile of each index is calculated for each day in the period of interest, and the percentile values on days when a fire ignition is noted in the database are plotted in rank order.
Due to the adaptive nature of the AAC and consequently varying estimation durations, averaged estimation times for the different databases are plotted, which is the reason for non-alignment of the values on the x-axis for the AAC algorithm with the other algorithms.
To evaluate the occurrence of high mass defect compounds in human metabolism, the mass defect of all endogenous or food-derived metabolites in the human metabolome database (hmdb) [6] were plotted by m/z (Fig. 2; Additional file 2: Table S2).
Both, matrix confusion plots and receiver-operative characteristic (ROC) curves were plotted for training, validation and testing databases.
Outliers were plotted as individual plots.
