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Assembled unigenes that had significant (e-5) BLASTX matches to the nr database were mapped to candidate GO terms.
Candidate sequences coming from MASCOT predictions over the RefSeq database were mapped onto the genome draft of Schmidtea mediterranea to retrieve the specific sequences for this species.
All orthology terms (1,207) identified from BLASTX against the KEGG protein database were mapped onto KEGG pathways using the tools available at http://www.genome.jp/kegg/ko.html.html
In total, 23.55% of these reads mapped either fully (21.23%) or partially (2.32%) to a known gene in the canine RefSeq database (Table 2), and a total of 14,418 canine genes (72.6% of all genes in the canine RefSeq database) were mapped as homologs of at least one fox read (Additional file 2, Table S1).
To compare the distribution of gene ontology annotations in our P. contorta 454 data to that of the A. thaliana genome, the unique genes from both our data and the TAIR A. thaliana annotated database were mapped to respective TAIR GO Slim terms using Blast2go.
We see within this table that, 29,035 TreeBASE taxa (within the local version of TreeBASE database) were mapped to TCl-Db taxa, and the number of taxon queries from the TreeBASE query log that mapped to the data within TCl-Db were 27,239.
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We design dedicated algorithms and data representation for the two steps of s2m: first the monomers of the database are mapped on the atomic structure, second the best tiling is computed so that non-overlapping monomers cover all the polymer structure.
Annotation from the OMIM (Online Mendelian Inheritance in Man) database was mapped to all associations identified by CODA in human using Gene3D [14].
Each gene in the database was mapped against the isolate assemblies to identify complete genes.
Drugs of a chosen database are mapped and visualized on an entered metabolic pathway.
The phenotype similarity network of human diseases is a fully connected network obtained from an earlier work of van Driel et al. [ 28], in which the pair-wise relationships between 5,080 human genetic diseases from the OMIM database are mapped.
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