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Oxytricha trifallax mitochondrial genomic peptides and bacterial genomes database were downloaded from GenBank as a mapping reference to remove reads which were probably contaminated by mitochondria or bacteria.
All screening examinations from the PPMI database were downloaded (209 healthy controls, (HC), 448 with Parkinson's disease (PD)), including data acquired from multiple different centres, using the same acquisition settings (see Table 1).
The mouse EST and ncRNA database were downloaded from GenBank.
Using Perl scripts all the reports of the dbEST database were downloaded and locally inserted into a MySQL database.
Aligned sequences in the Greengenes [94] database were downloaded and re-classified using the PhyloChip (G2) taxonomy on the Greengenes website (http://greengene.lbl.gov).lbl.gov
Sequences from the maize genome database were downloaded from (http://www.maizesequence.org/index.html).html
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The human protein database was downloaded as FASTA-formatted sequences from UniProt protein database (released in October, 2016).
Based on specific search terms, all relevant abstracts from the Web Of Science database are downloaded and analyzed using the text mining software VOSviewer.
Databases The DrugBank database was downloaded in SDF format from http://www.drugbank.ca/.
The database was downloaded on November 20th , 2012and sampling and analyses are conducted on the interventions that were included in the database at that time.
The FAERS database was downloaded entirely into an.xml file, then an R script (Additional file 5) was developed to extract the adverse effects data of all approved drugs.
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CEO of Professional Science Editing for Scientists @ prosciediting.com