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The significance of the difference between medians of data obtained from the Oncomine database was calculated as described by McGill and colleagues [ 19].
To identify biologically relevant matches, length of the segment of a query sequence aligned with the matching target in the database was calculated as per cent of the query length as well as the alignment length in bases.
For each linear 10% pseudomolecule division, the number of significant alignments from each test database was calculated as a percentage of the total number of FAexpTRL in the Os_CD database.
The phylogenic tree for the tissues in the reference database was calculated as follows: the density estimates for a gene in one tissue was compared to the density estimate for the same gene in another tissue.
Similar(54)
According to the cosine similarity function, the similarity between measured vector and sample i in the database is calculated as f 1 i = ∑ n = 1 N cos Φ ˜ n − Φ n i (10).
As an alternative to the AltSplice data, the number of splicing variants in the Ecgene database was calculated using a graph-theory based algorithm [25].
The score of "Database" was calculated by the chemical reactions contained in pathway databases.
But it seems like it could be calculated as well.
The average flavonol intake for the first 3 years of the trial was estimated using 55 of the 119 questions on the FFQ using the 2007 flavonoid database (U.S. Department of Agriculture, 2007) and was calculated as the sum of isorhamnetin, kaempferol, myricetin, and quercetin.
Sequences were compared with published germ line VH, D, and JH genes using the International ImMunoGeneTics IMGTT) database (http://www.imgt.org) Mutational status was calculated as percent deviation from the closest matching germ line VH segment.
Three-layer ANN architecture was trained using an experimental database and the concentration at t time over initial concentration (C/Co) was calculated as output variable.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com