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When the same search was done against protein sequences stored in the COG database, the fraction of identified gene products was lower.
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About 94% of the ORFs matched at least one protein stored in the Uniref50 or KEGG GENES databases, although the fraction of matched sequences varies and is significantly lower for Lpl and Spl (about 80%).
We retrieved 14, 410 unique duplicate genes and 5, 226 unique singleton genes from Ensembl database via BioMart, with the fraction of duplicate gene about 73%.
In the future, as SNV databases become more comprehensive the fraction of novel SNVs found in an individual will decrease.
However, as query length grows, the fraction of database sequences that contain a k-mer of the query grows closer to one.
Therefore, the fraction of database sequences that have to be considered for alignment to the query, which Kim et al. call the 'filtration ratio' grows closer to one and the relative performance of miBLAST deteriorates.
The Edge Consistency (C E ) was defined as the fraction of edges in database i also found in database j and involving genes shared between the two databases (see Methods and Materials).
Despite a possible redundancy of gene representation within the ZMGI assembly [ 17], this database can be used to estimate the fraction of the maize transcriptome covered by our GS20 454 collection of Palomero transcripts.
Nevertheless, the fraction of missing data in the compiled database is ~5%).
The fraction of the expressed whitefly genes present in our database can be roughly estimated.
Lower hybridization stringencies also increase the fraction of proteins without any annotations in the public databases in the metagenome.
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