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We provide an algorithm for the new operation of extracting a database subset in the presence of interconnected uncertainty.
Moghadam, P. Z. et al. Development of a Cambridge Structural Database subset: a collection of metal organic frameworks for past, present, and future.
We search all 1235 patterns from the Substructure Search Set against the Database Subset and measure the complete time to identify all molecules which contain such a substructure.
The database subset comprises the first 100.000 molecules from ZINC lead-like as of February 12th , 2011and is designed to resemble a complete database.
BLASTx was run on fungal target gene sequences against the nonredundant (NR) protein database (subset fungi, taxid: 4751) at NCBI.
The same search (using Mascot and Sequest only) was performed using the NCBI database, subset for snake taxonomy (txid8570; 40,887 sequences).
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We also analyzed PPI overlaps between HAPPI database subsets of different quality grades and two reference PPI databases.
Our database subsets were too small to determine if baseline creatinine levels were different at each procedure.
In Figure 3B, we show a sample frequency distribution of MetaGene overlaps among different quality grades of the HAPPI database subsets.
We utilized nine protein databases in this comparison: Swiss-Prot and TrEMBL (versions 56.3 and 39.3) [ 12], dictyBase [ 14] and RefSeq database subsets: mammalian, other vertebrates, invertebrate, protozoa, plant and microbial (release 31) [ 13].
Search results can be restricted to different database subsets (displayed on the Web page as checkboxes), and they are then grouped by common characteristics and displayed in tabs which show/hide the list of elements that match the request.
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