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Therefore, these results suggest the presence of a novel virus common to all individuals which cannot be identified using database similarities, analogous to viruses detected in human blood [15].
Of them, 3282 (2.87 %) of the unigenes were simultaneously annotated by all databases.> To further analyze the BLAST results in Nr database, similarities distribution, E-value distribution, best-hit species distribution, and best-hit species classification were investigated.
Similar(58)
We developed a prototype web tool that accepts a graph query, whose nodes and edges are proteins and their relations, respectively, or 'Event' and their connections, respectively, and searches the pathway/network data for similar subgraphs on the INOH database (Similarity Search).
Substantial experiments on both real-world and synthetic datasets show that the proposed PSO2DT algorithm performs better than the Greedy algorithm and GA-based algorithms in terms of runtime, fail to be hidden (F-T-H), not to be hidden (N-T-H), and database similarity (DS).
Similarity profile matrix of all pairwise combination of genes was determined using SSEARCH, which implements the highly accurate and sensitive approach of dynamic programming for database similarity searching.
Database similarity searches were run with BLAST at the National Center for Biotechnology Information website (http://www.ncbi.nlm.nih.gov).nih.gov
Our database similarity search initiated with an NCBI blast search using the sequence of mouse doublecortin protein (NP_034155.2).
All primers and probes were checked for possible cross-hybridization with bacterial genes using the database similarity search program BLAST.
Database similarity searches with the derived sequence stretches were performed using the short sequence blast algorithm against the non-redundant protein database limited to green plants.
Therefore, we integrated the database similarity search (i.e., BLAST) and ab initio prediction (i.e., OrfPredictor) for coding strand determination.
Of the predicted CDSs, 628 (67.7%, PV3056/3), 630 (67.9%, W73) and 629 (67.8%, P787) were functionally assigned based on previous experimental evidence or database similarity and motif matches.
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