This step, which is detailed in the "Sentiment analysis and item representations construction" section, is performed for each item present in the database, producing a set of items' representations.
For example, the motif, PxxxKSPxxKx, occurred 27 times in the brain sample, while only 49 occurrences were observed in the entire rat database producing a fold increase greater than 1200.
In the third filter, the 229 candidate HGT genes in B. mori were submitted to a BLASTp search against nr database, producing two categories of results.
To illustrate how it works, this method was applied in a pilot project to encode an existing palliative database, producing the corresponding term sets and report outputs.
In order to evaluate the coding components of the newly acquired sequences, they were sorted according to the level of homology to their counterparts in the Genbank reference protein database, producing a typical BLAST significance spectrum.
After a query had been initiated, brief information about the region being queried is displayed in a side window; then, simply clicking on a symbol of interest triggers an instant search in the database, producing detailed information for the users.
