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These phases include target protein preparation, compound database preparation, molecular docking, and post-docking analysis [6].
MLBB carried out the database preparation, and statistical analysis.
Special thanks to Jack Yeung for assistance with database preparation and merging.
To finish database preparation, we create a decoy database by shuffling each sequence [ 24].
Chromera sequences having homologs (see "Database Preparation") that were annotated as plastid targeted were classified as plastidal proteins as well.
3D similarity is calculated in different steps: 1) Drug database preparation: Bioactive conformations with specific chiral centers were downloaded from DrugBank.
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This is transferred to a Microsoft Excel database in preparation for analysis.
Those phenotype descriptions were then integrated into the PhenoDigm database in preparation for the phenotype prioritization method.
This platform has been applied to the analysis of a large number of data sets prepared for deposition to our ChemSpider database and in preparation of data for the Open PHACTS project.
ML participated in programming for database construction and preparation of the manuscript.
Both mouse and human Cpeb2 sequences have been updated in the NCBI database during the preparation of this manuscript.
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