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We note whether a tail check was performed, but it is not currently possible to restrict the database output for paleointensity experiments that incorporated this check.
We note in the database whether either of these approaches have been applied and it is possible to restrict the database output to only paleointensity results corrected for cooling rate dependence ('General constraints' section).
Each gene was analysed for relative expression according to database output score.
In the second mode, when a full query is requested, the engine returns the mediated user-defined SQL query using a pipeline, which directly connects the database output to the user.
The changes in the number of retrieved documents per query is listed in Table 7. Retrieved items in the results set of the queries were not unique: some duplicates were introduced by multiple queries per review, and some were the result of redundancy in the database output.
Identified metabolites were reported if present in at least 50% of the samples per study design group (as defined in the MiniX database); output results were exported to the BinBase database and filtered by multiple parameters to exclude noisy or inconsistent peaks.
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Predicted gene clusters from each of the database outputs were inspected manually and compared using BLAST searches.
All user queries are processed by Perl CGI scripts that execute database queries, parse database outputs and deliver results as HTML pages.
The microPIR2 database outputs search results by displaying a list of matched target genes and/or miRNAs with detailed information on the corresponding target sites.
Search steps performed within each database specifically for in vitro, in vivo animal and clinical literature are detailed in Additional file 1. Compilation of database outputs produced 6,137, 2,603 and 2,528 publications, respectively, for these searches.
Additionally in VIRmiRNA sub database, outputs of the basic local alignment search tool (BLAST /Alignment of the seed and complete miRNA sequence with that of viral as well as cellular miRNAs are provided.
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CEO of Professional Science Editing for Scientists @ prosciediting.com