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The species and database origin was contained in the sequence identifier.
Information about the database origin of each sequence was added to the unique identifier (i.e. OS-TA, OSEST, OSGEN for O. sativa TA, EST or genomic sequences respectively).
Twenty-one species were present in both databases, providing an opportunity to investigate the potential effects of database origin on pool coverage.
The identifiers of all the sequences used, and their respective database origin, are listed in the Additional file 2: Table S1.
The database origin of cDNA pools does not affect our coverage optimization after controlling for differences in sequence length, total pool size, GC content and the proportion of ambiguous nucleotides (see additional file 4: "Influence of database origin on pool coverage").
We modeled variation in cDNA pool coverage according to database origin, enzyme combination and the interactions of database origin and GC content with the enzyme combination (see additional file 4) in addition to the main effects of the covariates listed above.
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It is the product of a digital database, an origin suggested by the clarity of the maps and also by their telltale hiccups: leaving open the ends of dead end streets, breaking some curves into a series of straight runs.
For the same reason, 6 01 203 and 5998 are synonymous, but in this second example the synonyms are simple numbers that give no indication of the database of origin.
Regarding namespaces, it is worth noting that some providers of biological information follow the practice of prepending a prefix to the identifier to indicate the database of origin (e.g. HGNC IL1RL1), which has the same effect of segregating identifiers according to namespace.
Based on the LES databases, the origin of these instabilities can be identified and attributed to key events such as vortex shedding, excitation of pressure fluctuations due to exothermicity, extinction by strain, and operating conditions.
The database's origins go back to an investigation by Senator Charles Grassley (R IA) into drug company consulting by academic researchers.
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