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It is derived from the CSD and the refined set of PDBbind database minus the Vernalis dataset ligands to remove any bias.
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In addition, an extensive comparison of existing general correlations with databases for mini-channels has also been made.
STAP builds a mini database containing all sequences from this group and then applies the procedures used in Step 2 to create a subset of sequences from this mini database.
The read lengths provided by high-throughput sequencing would be sufficient to build a database of ITS2 mini-DNA barcode sequences.
UniTags that matched to the negative strand of the nucleotide sequence in the database carry the prefix "minus" in their respective gene identification (GI) column (Additional file 1).
The developed method was tested on 50 digitized mammograms of the mini-MIAS database.
To test our method, a set of ten ROI images were selected from several mammograms of the mini-MIAS database provided by the Mammographic Image Analysis Society MIASS) [40].
This architecture includes a series of mini-databases, a number of knowledge-based components ('experts'), models of the pond ecosystem, and various decision support features (e.g. assembling alternate management scenarios, economic analysis, and data visualization).
Then a modified Smith-Waterman alignment [33] was performed on the protein against the mini-database of BLAST hits.
A BLAST [32] search (blastp, e-value cutoff: 0.1) was performed for each protein against nraa and all significant matches were stored in a mini-database.
Another example illustrates the use of TANDEM in 'two-pass' workflow [9], where the first discovery stage with routine PDS was followed by the second search of a mini-database generated from proteins identified in the discovery stage with a broad range of PTM-related mass offsets included.
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