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The original Health and Retirement Study public use database is produced and distributed by the University of Michigan with funding from the National Institute on Aging (grant number NIA U01AG09740).
In the current version of the software the database is produced locally.
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The plant extracts database was produced from literature from different authors.
This database was produced by providing a home, open-ended laboratory site and page title list to choose the titles of the open-ended laboratory.
The database was produced by downloading all human and P. falciparum 3D7 sequences available from NCBI GenBank on May 25, 2006 (based on GenBank release 153).
The data in the GNF expression database were produced using Affymetrix whole genome chips making them appropriate for this type of analysis.
About 30% of all Brassica ESTs downloaded from the NCBI dbEST database were produced from seed developmental stages.
A custom RepeatMasker database was produced by combining known Triticeae repeat sequences from TREP release 10 [ 37] with Repbase Update release 15.11 [ 38, 39] and TIGR Plant Repeat Databases [ 40, 41].
The PANTHER tree building process assigns stable identifiers to the nodes so that when new releases of the PANTHER database are produced, PANTHER will report which tree nodes have undergone topological changes.
A first TFBS/promoter database was produced using promoter sequences consisting of the - 1500 to +500 genomic interval relative putative TSSs, using the start of the RefSeq or the mRNA with the most distal TSS for each gene.
To further filter down these transcripts, a bowtie database was produced from these transcripts and the poly(A)+ transcriptome reads were aligned for both samples with settings –v 0, –k 50, and –m 50 and transcript abundance was calculated as reads per million (RPM).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com