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In ODB++(X), the database is contained in a single XML file by default.
In SQLite, a database is contained in a single file, which includes both the schema and the data.
The abstraction of the database is contained in the QCAnalysis module, which is used to add an analysis to the database.
In terms of building and initiating queries within custom applications, the Java API mirrors the Perl API whereby the abstraction of the database is contained in the QCAnalysis class.
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Since the links between the ChEBI database and the DrugBank database are contained in both databases, we merged these two sets of links into one.
Note that more than 5500 reactions in the hybrid database are contained in KEGG database and less than 300 reactions are specific to the E. coli metabolic model iJR904.
Since instances of a data structure in conventional databases are contained in a defined digital media, permission management is an issue of access to the system itself.
Another software package for model reconstruction is the Pathway Tools suite [ 39, 40], which is built around the BioCyc database collection of metabolic pathways encompassing virtually all domains of life; currently, 1129 genomes and their respective databases are contained in BioCyc.
In case a query molecule is contained in the database (spectral library) to search in, we can use any method of spectral comparison, such as peak counting or dot product, to identify the correct answer.
Since DisGeNET contains information on the genetic determinants of human diseases and is not specially focused on biomarkers as defined in the present study, it is not surprising that only a small fraction of the information extracted from the literature is contained in DisGeNET database (July 2012 release).
Accordingly, while the study allows one kind of "bird's eye" view of over a quarter of a century of health services research represented by PubMed, it does not offer an opportunity to examine why or how nursing identity has come to be constructed in these ways within the health services literature, at least as it is contained in this database.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com