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Obviously, these odd database inconsistencies cannot be taken into account automatically by a tool like the WormBase Converter, which needs to run with fixed rules, but such rare inconsistencies can be readily identified and we included the option to correct manually the output files from the WormBase Converter.
Database inconsistencies are avoided by considering only one storage (i.e. database) server.
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The database has inconsistencies and contradictions because of inevitable subjective interpretations and neural network approaches have been proposed for dealing with these.
This is also corroborated by three models in the uncurated branch of the BioModels Database containing inconsistencies.
Finally, the national study coordinators reviewed the database, identified inconsistencies, and sent the correction report to the participating centers which were required to make the corrections [ 18].
All data were double entered into a CSPro 4.0 database and any inconsistencies were corrected.
An additional check was performed after entering the data in the database, to avoid inconsistencies due to any mistakes in the data input.
Although we attempt to include only complete genomes in our sequence database, because of inconsistencies in the annotation of sequence data some partial sequences nevertheless make it into our databases.
The 12 NCBI peptide database entries with inconsistencies include wrongly named sequences (IRT-18 and TEM-77, GI 6688989) and sequences for which the mutation profiles do not correspond to those listed in the TEM mutation table.
Systematic QC involved querying the database for potential inconsistencies (e.g., male-only effects being assigned to female treatment groups, or systemic LOAEL being set at multiple dose levels) along with updating vocabularies and related records.
Many reaction databases contain stoichiometric inconsistencies (Gevorgyan et al., 2008), where the stoichiometry for at least two reactions is inconsistent with conservation of mass.
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