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The therapy domain representation was created from the KCEMS database in a manner similar to that described above for the response domain.
In hopes that this will set-forth a new era of data-sharing, I hope that the authors can discuss their open database in a manner that parallels Giorgio Ascoli's discussion on sharing neural reconstruction files (Ascoli, 2006).
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We produced a step-by-step guide on how to interrogate standard databases in a manner that produced listings of patients in the relevant age group.
Therefore, in this study, we queried each protein sequence in our dataset and extracted the PSSM profiles by running PSI-BLAST [69] against the NCBI nr database, in a standard manner (by three iterations, with a default cutoff E-value).
The DataLookupService [ 72] is a Web Service which allows the ICSP platform to retrieve data from a database in a flexible manner.
We propose a method to select subsets from the Progenetix database in a principled manner to create datasets with desired properties.
Therefore we will search for FreSCOs in a set of protein-DNA complexes from the PDB database in a similar manner to the patterns with only amino acids described previously.
The study was conducted retrospectively and the Scientific Institutional Board of the Hospital ("Comitato Tecnico Scientifico OPBG") approved the study, including the use of a set of anonymised data extracted from the OR database, in a retrospective manner (Study Number 201302Q003154).
The numbers of sequences obtained from each source and those in the final dataset are summarized in Table 4. Sequences from 9 species, Homo sapiens, Mus musculus, Rattus norvegicus, Gallus gallus, Xenopus tropicalis, Danio rerio, Ciona intestinalis, Drosophila melanogaster and Caenorhabditis elegans, were obtained from the UCSC genome database in a similar manner.
To enable the updating of this database in an optimal manner, methods are designed to be accomplished by individual Landsat scene.
Next, we identified the patterns of response of the HCGs of the AAA network to the 211 short-term biological perturbations of the NASC database in an identical manner to that used for the Asp-family network (see above).
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