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A data set comprising 630 manually curated atom maps for a subset of the KEGG database has been provided by [ 34].
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In the relevant cases, the internationally accepted names, as they appear in the NHP-MHC database, have been provided (Fig. 1).
The best non-self hits common to SMAT80 and BLOSUM90 matrices along with their E-values and bits scores for these nine apicomplexan species against non-redundant (nr) database have been provided as Additional File 2: Supplementary Table S2.
References to the publications based on the use of these databases have been provided at the source website[14].
In addition, links to external databases have been provided.
The non-redundant (nr), swiss-prot and PDB databases have been provided for finding orthologs for apicomplexan proteins using parasite specific and standard matrices.
Further, a database dump has been provided to support integration with other database resources.
A recent example of challenges encountered when merging human databases from the US has been provided [ 28].
The information of annotated contigs has been semi-automatically corrected and filtered for redundancies, and is stored in a web database (http://www.nutrigroup-iats.org/seabreamdb) that has been provided with Blast and other search options for the scientific community.
Moreover, an integrated access to public databases such as NCBI and Molgen has been provided within our platform, as an aid to geneticists during the configuration of the genetic screening setup for inserting information about the genes to be screened, their exons and their relevant known variants.
As a model organism database, Xenbase has been providing informatics and genomic data on Xenopus (Silurana) tropicalis and Xenopus laevis frogs for more than a decade.
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