Exact(6)
This paper reviews the MIT experimental database generated using engineered surfaces with carefully-controlled characteristics, and discuss its applications to LWR safety, both design-basis and beyond-design-basis accidents.
Secondary searches were performed with Sequest using RefSeq Human Gnomon predicted protein database and a reversed database generated using the db_reverse Perl script [67], to minimize false sequence detections (to <5%).
In fact, any database generated using CycADS includes, for each annotated protein, more detailed information about the source of the annotation in the Summary of the Gene webpage (see Figure 2).
Also removed were sequences representing bacterial, yeast or fungal contaminations identified by BLAST searches [ 51, 52] against E. coli K12 DNA sequence (GI: 6626251), Saccharomyces cerevisiae [ 53], Aspergillus nidulans (TIGR ANGI.060302), and Agrobacterium tumefaciens (custom database generated using SRS, Lion Biosciences).
To study the expression profiles of rice TFs, we used microarray data available at the Gene Expression Omnibus (GEO) database generated using Affymetrix platform because it shows high degree of reproducibility and homogeneity across different laboratories when compared with other platforms.
Also removed were sequences representing bacterial, yeast or fungal contaminations identified by sequence alignments using BLAST [ 62, 63] to E. coli K12 DNA sequence (GI: 6626251), Saccharomyces cerevisiae (GenBank, ), Aspergillus nidulans (TIGR ANGI.060302), and Agrobacterium tumefaciens (custom database generated using SRS, Lion Biosciences).
Similar(54)
The transcriptional induction of alkaloid metabolism in cultured cells provides an opportunity to identify components of this process via the integration of deep transcriptome and proteome databases generated using next-generation technologies.
The AcypiCyc database webpage includes also, for comparative analyses, two other metabolic reconstruction BioCyc databases generated using CycADS: TricaCyc for Tribolium castaneum and DromeCyc for Drosophila melanogaster.
The quality of computationally derived BioCyc databases generated using the PathoLogic program of the Pathway Tools system is directly linked to the content of the annotation file used to build the database.
Thus, to accurately characterize gene regulatory networks from accessibility data, we need comprehensive TF motif databases generated using in vivo/ in vitro assays or computationally based de novo motif discovery algorithms.
The catalog of proteins reported in 3DSwap database was generated using an integrated pipeline of database searches, literature curation, structure visualization and subsequent analysis.
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