For this study, data from nine of the participating practices, who provided data to the CiPCA and PiPCA databases for the complete period from 2001 to 2008 and used version five of the Read code system, were included.
Second, DNATOOLS software was used to build local databases from the maize complete genome nucleotide sequences and protein sequences.
Initially an annotation of the SSR containing unigenes was done using BLAST in the complete GenBank NR database, and the complete coding sequences from Arabidopsis [ 60].
To our knowledge, we hereby also present the first insect EST database that is derived from the complete CNS.
To help further resolve this phylogenetic placement, we performed a taxonomic distribution analysis [19] by comparing each predicted protein in the F. succinogenes genome against a database containing all proteins from the complete microbial genome collection.
As the U. gibba transcriptome published by Ibarra-Laclette et al. [ 12] might have been incomplete, we downloaded the database 19475-mRNA, constructed from the complete genome of U. gibba, from CoGe website (https://genomevolution.org/CoGe/-id36222).
The 'non-nematode' database comprises amino acid sequences from the complete non-redundant protein database (April 30 , 2009 excluding those from nematodes.
The 'parasitic nematodes' group contains all available protein sequences for parasitic nematodes and ESTs from GenBank (17 February 2007), translated into peptide sequences, whereas the 'non-nematodes' database comprises amino acid sequences from the complete non-redundant protein database NR (17 February 2007) excluding those from nematodes.
Local Oracle databases have been constructed from the complete genome sequence data available at NCBI Genbank, TIGR, EMBL, IMG (JGI), and Baylor HGSC.
The main outcome of the SELF campaign observations therefore was the determination of a homogeneous zero-epoch data set and the creation of a database that includes the complete link from the GPS sites to the sea level in the five Mediterranean countries involved.
