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Although not included in the Figure 1, we observed that BLAST and SSAHA2 database formatting procedures are faster than Simrank's.
In order to reduce the EST sequence redundancy and consequently the time complexity of the process, the sequences were processed using CD-HIT [ 52] prior to database formatting.
For example the section starting with "The Danio rerio EST subset was also downloaded from Entrez in GenBank format" contains trivial details about data download, concatenation, database formatting and local blasting.
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In order to identify the sequences originated from surface and water column, another BLAST search was done, with similar parameters, but on a database formatted using only the eukaryotic SSU rRNA sequences of the EMBL database described as "environmental sequences".
Each questionnaire or interview, per assessment point, has its own file in the database, formatted using PHP Surveyor version 1.0.
"We send them all the data in some database format, and they plug that into their software package and then they type in the code and press 'Enter,' " Bahcall said.
Professor Long gave the judge dozens of pages of recent I.R.S. documents showing that instead of providing data in electronic database format as the court ordered, it released some in Microsoft Word and printed out other data on paper that was mailed, unsorted, in boxes with gaps in sequentially numbered pages.
You have given me a skimpy Etch A Sketch on which to compose, a cramped spot on the sentence-assembly line — and then harangued me with orders to save or reformat as you stall and splutter and assert points of ludicrous corporate chauvinism ("Invalid product key"! "Unrecognized database format"!).
Both solutions use a specific package database format as well as a specific repository format.
It is also compatible with all sorts of database formats, from MySQL to NoSQL and Hadoop.
The platform supports dozens of database formats and sources — Hadoop, NoSQL, images, you name it.
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