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Herein, we mapped the genes uniquely regulated by candidate miRNAs to GeneGo database for analysis of enriched signaling pathway and disease ontology [ 40– 40].
KEGG Application Programming Interface (API) was used for retrieving information from the database for analysis of putative pathways in M. oryzae.
Our database for analysis of risk for second primary malignancies according to family history of breast cancer was created by a link between the Cancer Registry from 1958 to 2000 and Multigeneration Register using the individually unique national registration number.
The frontend does also house a BLAST search form, which allows BLASTN and BLASTX searches within the EST database for analysis of additional sequences (Supplementary figure S4d in Additional file 8).
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An overview of the web-based resources and databases for analysis of proteomic data is also provided.
In summary, more care should be placed when using PPIN databases for analysis of newly acquired data, and when considering prior knowledge when designing new experiments.
The specialized database constructed for analysis of MS/MS data contained more than 2.5 million protein sequences, some of which were redundant.
Thus, inclusion of the Butte 86 sequences in the database used for analysis of MS/MS data made it possible to distinguish proteins from the two cultivars.
In proteomics experiments, the detection and high confidence annotation of proteins and the significance of corresponding expression differences can depend on the quality and the species specificity of the tryptic peptide map database used for analysis of the data.
For proteomics studies aimed at distinguishing closely related gluten proteins, it is essential that the sequences of the complement of proteins expressed in a given cultivar are included in the database used for analysis of MS/MS data, so that spectral data will yield a maximum number of peptide identifications with high probabilities and cover a significant portion of the protein sequence.
Although the use of administrative databases allows for analysis of a large population-based cohort, the databases lack comprehensive clinical and laboratory data or medications.
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