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For collections described in EAD, the database exports an XML file containing AbIDs, barcodes, and other data.
"The full database exports are taking much longer than anticipated," the company noted.
The stable identifiers are also used in database exports that are publicly available as users need to be able to link the downloaded data to their own data sets.
Batch mode is required for checking large BioPAX models, such as complete database exports, whereas library mode is typically used to check for correctness as a BioPAX model is being imported or manipulated by software tools.
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... The data is accessible free of charge through a number of webservices and a daily database export.
Today, there are a number of solutions for managing address books on Mac, but many of those you'll find in Mac App Store are focused on utilitarian functions – like de-duplicating your contacts database, exporting contacts, syncing contacts with other services, and so on.
Additional file 13: Database export formats for LAGOS GEO.
Lists of differentially expressed genes were defined by a final database export using 5 and 0.01 as cut-offs for DESeq2-based FCs and P-values, respectively.
The application allows users to browse and query MIRIAM Database, submit new data types for inclusion in the database, export the whole content of the database and access all the information about the project (see the left-menu on Figure 1).
Although we limited ourselves to short path distances and two pathway databases that we were most familiar with, PERA can be applied to extract information from any pathway database that exports to BioPAX and can be configured for searching paths of arbitrary length.
The data collected was entered into the database and exported to SPSS 16 for analysis (SPSS Inc 2007).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com