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The pvgis database, derived from the Photovoltaic Geographical Information System - Interactive Maps [31], was used to validate the data.
This result was probably caused by using a different source of datasets when they adopted the sc-PDB (a database derived from the PDB).
Proteins were identified and quantified by 1D-LC MS/MS as described by Gungormusler-Yilmaz et al. (201D-LC MS/MS thas a specific peptidescribedse derived from the C. necator H16 genome was used for alignment.
In this work, we used MED-SuMo on a fragment database derived from the PDB: each pdb file is converted into one or more pdb files containing a single fragment as ligand.
The resulting TC FASTA for each sample was then evaluated using BLASTn [22] against a custom database derived from the RDP-II database [23] and GenBank (http://ncbi.nlm.nih.gov).nih.gov
To identify peptides, data files were generated from the MS/MS scans by Bioworks 3.0 using the SEQUEST algorithm (threshold, 105; minimum group scan 2, Xc >1.0, Thermo Fisher Scientific) and searched against the complete amino acid database derived from the B. pertussis Tohama genome database.
Similar(33)
Table 2 shows results for the two protein sequence databases derived from the JGI genome.
We searched spectral datasets against the protein databases derived from the antibody repertoire.
The relevance in human lupus of the pathways identified in the mouse model was explored using information from several databases derived from the published literature.
The maintenance of timely, high-quality computable resources provided by the growing number of curated databases derived from the scientific literature is critical to the entire scientific enterprise.
An advantage of the CC is that all data are cumulative, allowing for cross-referencing of phenotype and genotype databases derived from the CC strains.
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