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The microarray database deposited in NCBI/GEO contains the expression data of human Grp78 from each exon-exon junction probe in 44 human tissue samples and 8 human cancer cell lines.
Here, we report: i) the unigene assembly based on the globe artichoke EST database deposited in GenBank by the Compositae Genome Project (CGP), ii) the identification of a wide set of EST-based microsatellite markers and iii) the evaluation of the informativeness of a subset of these markers using a panel of C. cardunculus genotypes.
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We computed genus for RNA structures with better than 3.0 Å resolution in the PDB database (also deposited in the BGSU RNA Site database14).
For each gene in the database, annotations from several databases were extracted and deposited in our database: 1) gene ontology (GO) categories [ 24], 2) Symatlas gene expression data [ 25], and 3) OMIM human disease phenotypes [ 26].
This ncRNA database includes ncRNA deposited in GenBank, FANTOM3 mouse and human ncRNAs, and H-invitational Integrated Database of Annotated Human Genes version 3.4 (Szymanski et al. 2007).
The genes and ESTs were localized on chromosomes by searching the UniGene database and genome information deposited in GenBank.
Protein sequences were extracted from various public databases for the drought stress-related genes and deposited in the database.
Errors in the annotations are routinely deposited in databases such as NCBI and used to validate subsequent annotation errors.
Rice Expressed Sequence Tags (ESTs) were first deposited in databases early in the 1990's.
None of the sequences obtained were identical to sequences deposited in databases.
We also compare them with other isolates for which sequences have been deposited in databases.
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