Sentence examples for database data not shown from inspiring English sources

We experimented with using reverse PSI-BLAST to do so, followed by confirming hits with HMMer, but this was not much faster than running BLAST against the database (data not shown).

A query can be compared to ad-hoc families by running BLAST against the seeds of the ad-hoc families, which is much faster than running BLAST against the entire database (data not shown).

Indeed, the most commonly found host proteins, including: albumin, calmodulin, actin, superoxide dismutase, were found whether we used the mouse database or the poorly annotated guinea pig database (data not shown).

Conversely, Henipavirus NCORE, PMD and XD regions do not display any significant overall relative enrichment or depletion with respect with the average amino acid composition in the SWISS-PROT database (data not shown).

A BLAST [11] of each of the 100 was done against the nonredundant database (data not shown) and confirmed that the sequence that gave the best hit was usually the one that was closest on the tree, and that the closest one on the tree was always one of the top few.

All of the sequences that had a hit against the SwissProt database were assigned to a protein family based on the Pfam database (data not shown) and based on these were assigned to a Gene Ontology (GO) category (GO database release July , 2009 [31] (Figure 5).

The same results have been observed for all the combinations of stages in a previous study [ 1] and with this database (data not showed).

Since the composition of the PDB database is somewhat biased, we also searched the Pfam and SMART databases (data not shown).

Genetic diversity thus observed was extremely reduced, and sequences obtained were almost identical to that of sequences of the functional orthologs found in the databases (data not shown).

However, the other validated splicing occurrences did not affect protein domains listed in public databases (data not shown), implying that the splicing instead impacted on domains that are specific of these genes.

Similar results were also obtained for the searches against the other three databases (data not shown).