Sentence examples for database clustering from inspiring English sources
For the sequences identified in the CR-EST database (clustering project g03) http://pgrc.ipk-gatersleben.de/cr-est/, GeneRunner software http://www.generunner.net was applied to design PCR primer pairs each amplifying a 300-600 bp fragment from an individual EST.
Basic processing steps in such toolkits include trimming, screening and aligning sequences against a database, clustering of sequences into operational taxonomic units (OTUs), and comparison of the sequence composition between different samples.
The following kinds of derived data are stored in the database: Clustering sequences from 36 fungal genomes: We compared 348,995 protein sequences from the 36 genomes integrated in e-Fungi (see Table 1) using BlastP [ 29] with an E-value cut-off of 10-5.
Other database clustering methods have also been suggested as alternatives for clustering these models.
The above description summarizes the database clustering methods such as PAM, CLARA, CLARANS which are relevant to our work.
In part, that's due to the fact that Google is also the major contributor to GRPC, a queuing project the company donated to the CNCF, and Vitess, the database clustering system it developed for YouTube.
Before mapping the raw reads, we collected 1.4 million wheat ESTs from several databases, clustered into 127,039 Uniref clusters yielding to the best of our knowledge, the largest well-annotated EST databank in wheat (Additional file 1: Method S2).
As previously demonstrated, using the NJ method [ 69], insect Vtg sequences available in databases clustered with high confidence in a group separated from other Vtg sequences, including those of crustaceans apoCr.
We deploy OCPtilecache on independent hardware to reduce load on the database cluster.
We used OpsManager to manage backups, handle orchestration and provide monitoring for our database cluster.
It was caused by a runaway condition at a "database cluster" of computer servers among the 500 sites that form Facebook's worldwide network.
