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The gene structure and orientation of monocupins were derived from the TIGR Rice Genome database build 5.0.
For this purpose we assigned compounds from a 28,683,050 million compound database build from PubChem data source.
This paper proposes a specific architecture, reporting results on a synthetic database build according to SandS project current designs.
To maximize the extraction of the information present in these signals, this work proposes a chemometrics approach for the study of the database build up with historically accurate reproductions of brazilwood, cochineal, lac dye, and more recently kermes.
The human SNP database was downloaded from the NCBI dbSNP database (build 130, released June 2009) [7].
The information related to the populations genotyped for the four SNPs and their minor allele frequencies were retrieved from the dbSNP database build 128 [128.
The information related to the populations genotyped for the three SNPs with rs numbers and their minor allele frequencies were retrieved from the dbSNP database build 128 [128.
A total of 69,975 Drosophila melanogaster exon sequences were retrieved from the Ensembl database (build BDGP5.4) via BioMart service [52].
Orthologous genes were identified using the Homologene database (build 58).
This SMIM1 polymorphism has not yet been reported in the NCBI dbSNP database (build 137).
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Combined with RAP-DB genome annotation (the Rice Annotation Project Database build-5 data set), 76,013 transcripts corresponding to 45,844 unique gene loci were assembled, in which 4873 gene loci were newly identified.
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