For instance, when a gene's function becomes known for an organism that is already in the database, a batch procedure will be performed, making minimal changes to the database without breaking any foreign keys.
The centroided peak lists of the CID spectra were searched against the National Center for Biotechnology Information (NCBI) protein database using Batch-Tag, a program in the in-house version of the University of California San Francisco ProteinProspector package.
The centroided peak lists of the CID spectra were searched against the National Center for Biotechnology Information (NCBI) protein database using Batch-Tag, a program in the in-house version of the University of California San Francisco ProteinProspector package, considering phosphorylation on serine, threonine, and tyrosine as variable modifications.
Multivariate statistical models are built from historical databases of batches already completed, and they are used to enable the real time identification of the variability sources, to reliably predict the final product quality, and to improve process understanding, paving the way to a reduction of final product rejections, as well as to a reduction of the product cycle time.
The FDR is further magnified if it is necessary to search the target (and decoy) databases in batches, since the same spectrum can be assigned multiple times to different peptides.
Meanwhile, past research on pattern mining algorithms mainly focus on mining tasks processing static database such as batch operations.
MC developed the online database and undertook batch BLAST processes.
The KEGG database [ 42] batch entry allowed us to evaluate the large set of down-regulated miRNA targets and antitargets.
To this end, we combined datasets for human breast cancer and the mouse mammary tumors in our database, removing both batch and platform effects (Additional file 16).
Users can also submit a list of up to 1000 GenBank or UniGene ID to identify probe matches with any array type in the database using the Batch query function.
