Sentence examples for database assignment from inspiring English sources

Computational resources required by taxonomic annotation depend on the reference database, assignment algorithm and the number of sequences to be assigned.

In any case, this database assignment will be reflected as a synonym within the QTL record, and the original, published QTL name will be retained for search purposes.

In the KEGG analysis, KEGG database assignment showed that some contigs coded for the same proteins, and the KEGG pathway analysis accounted for this when calculating the number of coded proteins.

A combination of sequence homoplasy and inaccurate database assignments (i.e., falsely assigned reference sequences in the RDP database) could have contributed to our inability to assign Proteobacteria sequences to taxonomic groups below the family level.

True hits were determined based on the human-curated SCOP 27 database assignments, rather than a pure structure-alignment based score.

Therefore, we performed an extensive search for possible TFs using database assignments, Hidden Markov model (HMMs) profiles, BLAST similarities and literature searches.

The pathways for fatty acid biosynthesis and the glycerolipid metabolism were reconstructed by comparison of annotated genes with KEGG database assignments.

Misidentification of novel histone PTMs can come from a variety of sources including isobaric mass shifts due to histone sequence variation or other modifications, sample preparation, gas phase chemistry within the mass spectrometer, and false positives or incorrect database assignments [ 22].

In the new HSQC database, the assignment of the C H HSQC peaks of all metabolites is performed by using the NMR spectra of isolated compounds in the BMRB, the HMDB, and the literature.

The minimum distance of the root locus analysis of digital root mean square deviation (RMSD), total energy, RMS fluctuations (RMSF), residue matrix database structure assignment (DSSP), and cluster analysis could be calculated from the program of MD simulations.

To investigate the biological roles of genes that showed significant differences in expression in liver tissue of Cmah-null versus WT mice by microarray analysis, we used the PANTHER database for assignment of genes and to establish GO classifications.