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Thus, custom PHP scripts were written to receive data from the Ajax engine, connect to the E-Utilities server or to the local MySQL database as needed and deliver an output in HTML format.
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Data was analyzed using Bioworks, the SEQUEST algorithm and Sage-N Sorcerer to determine cross-correlation scores between acquired spectra and NCBI protein FASTA databases or any other databases as needed.
Requirements included: simple search interface in addition to an advanced search using pre-specified filters, ability by end users to create information on new databases, a wiki-like mechanism to change information about databases as needed, and an export function of data dictionaries in a spreadsheet format.
Afterward, a manual curation on the annotation of genes and search for pseudogenes and other features was done on UGENE using NCBI's BlastX, BlastP (Altschul et al. 1997), and delta-BlastP (Boratyn et al. 2012) against NCBI's nr and nt databases as needed.
as needed.
Our proposed software agent technique also enables post-coordinated analyses to be designed and carried out on the confidential database(s), as needed, compared to a more conventional solution based on the Web Services model that would only support a rigid, pre-coordinated (pre-determined) and rather limited set of analyses.
There is also Web Administrator, Security Administrator, and Database administrator as needed by the company in question.
The regular expressions that removed abbreviations and shortcuts are tiny pieces of code that can actually be stored in the database and updated as needed to accommodate a different set of abbreviations and shortcuts existing in a different context.
"In an SQL database, as needs evolve the schema and storage of the existing data must be updated.
Therefore databases were perceived as needed to monitor the effectiveness and safety of the use of pharmaceuticals in clinical practice.
This approach ensures flexibility, as the database can be conveniently extended as needed without upgrading its schema in most of the cases (Imbrechts et al., 2009).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com