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Alignments of the HIVCONSV immunogen with the global HIV-1 sequences of group M including recombinant forms revealed that at least half of the sequences in the Los Alamos database are identical to fragments 6 and 8 (the median distance = 0), while fragments 2, 3, 10, 11, and 12 differ in less than 3% of their aa positions when compared to half of the sequences (median <0.03).
However, as more than half of the mtDNA sequences in the African database are identical to sequences from other ethnic groups, African-American mtDNAs will be much more likely to match sequences from multiple ethnic groups than sequences from a single ethnic group.
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It is to be noted that these four simulated data sets and the modified reference database were identical to those used for evaluation of SPHINX algorithm [ 14].
We had to omit this step because the wild type sequences in the databases are identical to the mutant sequences, apart from the single missense mutation.
At present we do not know whether the 2 strains of each species, one tested and the other found in the database, are identical.
DG206 contains 205 predicted open reading frames (ORFs), of which 103 have significant similarity to genes in current databases; approximately 40 are identical to genes in either the D. geothermalis chromosome or DG574; and 28 have homologs in D. radiodurans, including 3 ORFs encoding highly diverged single-stranded DNA-binding proteins.
Pseudoknots detected in this family are identical to those documented in the Recode database.
Most of these pseudoknots are identical to those previously reported and shown in the Recode database.
The predicted cDNA and protein sequences are identical to the NM_032513 nucleotide and NP_115902 protein entries of Entrez database.
Controls are identical to ground-based combat.
The second protein sequence database (DB2) was identical to DB1 except that diatom sequences (T. pseudonana and P. tricornutum) were replaced by those of the two Phytophthora species.
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