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Since the links between the ChEBI database and the DrugBank database are contained in both databases, we merged these two sets of links into one.
Note that more than 5500 reactions in the hybrid database are contained in KEGG database and less than 300 reactions are specific to the E. coli metabolic model iJR904.
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In ODB++(X), the database is contained in a single XML file by default.
More information on the FAO Capital Stock database is contained in the related Metadata and Data Dictionary files.
In SQLite, a database is contained in a single file, which includes both the schema and the data.
The abstraction of the database is contained in the QCAnalysis module, which is used to add an analysis to the database.
In terms of building and initiating queries within custom applications, the Java API mirrors the Perl API whereby the abstraction of the database is contained in the QCAnalysis class.
Since instances of a data structure in conventional databases are contained in a defined digital media, permission management is an issue of access to the system itself.
Another software package for model reconstruction is the Pathway Tools suite [ 39, 40], which is built around the BioCyc database collection of metabolic pathways encompassing virtually all domains of life; currently, 1129 genomes and their respective databases are contained in BioCyc.
The Kerberos 5 database libraries are contained in kdb.
An illustrative case is shown in Figure 4a for the glucose environment when n = 831, the value of the number of reactions from our database that are contained in the E. coli metabolic network.
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