Sentence examples for database alignment from inspiring English sources

Because this aligner is not tied to a particular database alignment, this aligner can be used with any reference aligner whether the DNA represent rRNA genes or protein coding genes [e.g. 26].

The database alignment implemented in Sybyl7.3 [16] was used to align 102 compounds using most active compound 32 as a template.

The database alignment is depicted in Figure 1.

Ligand molecular superimposition on the template structure was performed by database alignment method.

Molecular superimposition of antagonists on the template structure was performed by database alignment method.

The conventional ligand-based 3D-QSAR studies were performed based on the low energy conformations employing database alignment rule.

When the contigs without hits in SwissProt were searched against RefSeq proteins and then the nr database, alignments for additional 1,149 and 110 sequences were retrieved, respectively.

Database alignments were carried out using the Nucleotide-Nucleotide BLAST software application (BLASTn, version 2.2.27+), specifying a word size of 14 and E-values ≤10-15 ≤10-15

For each database, alignments with a score greater than 300 (BLOSUM62, gapo = 10, gape = 1, e-value = 1e10−5) were retained and the best alignment was used to identify the probable open reading frame to be considered for subsequent analysis.

RT-PCR products (614, 728, and 1080-nt long, respectively) were sequenced (GenBank accession nos. DQ383272, DQ383273, and DQ399055, respectively) and compared with ONNV sequences available on GenBank database; alignments were performed with ClustalW 1.7 software.

On the basis of the aggregated data from the sequence database, alignments were made of the regions in the viral RNA that contain the primer-binding sites for the set of primers with the highest ranking for the diagnostic evaluation to generate more optimal designs of primers (12 ).