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The data were searched against a UniProt human database using Sequest within Proteome Discoverer.
The data were searched against the human entries in the SwissProt database using the built-in decoy option.
MS data were searched against Uniprot Rattus norvegicus proteomes datasets (ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/) and 245 common protein contaminants using Proteome Discoverer 1.3 software.
The LC MS/MS data were searched against the homemade MMD using the Proteome Discoverer 1.4 with SEQUEST as search engine (Thermo, USA).
The peptide mass data were searched against the protein database SwissProt.
The data were searched against the SwissProt database, from which α2-gliadin was correctly identified as the best hit.
MS/MS data were searched against a Swissprot 51.6 mouse database using MASCOT 2.2 (Matrix Science, London, UK).
Production data were searched against the concatenated forward and reverse IPI Human database using the Mascot search engine according to the standard protocol of NextGen Sciences.
The data were searched against the NCBI Virus database using Mascot, as well as against the late minor capsid protein L2 (gi 4927726) sequence using SEQUEST Thermo Scientificc).
The combined PMF and MS/MS ion meta data were searched against the specified protein database within the PGS 2.0 workflow.
Raw data were searched against the EBI database (12/01/2006 release) supplemented with a decoy database where each entry of the original protein contains its reversed sequence.
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CEO of Professional Science Editing for Scientists @ prosciediting.com