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The high-frequency components in the data were removed with respect to the topology of the gene network, after which the smoothed data was used for classification.
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Within the quadruplicate repeats, false data were removed in accordance with the guidelines set forth using the Dixons Q-test of Outliers.
During the first iteration, samples with >90% missing data were removed prior to exclusion of SNPs with >90% missing data, and then the maximum allowed percentage of missing data was decreased in steps of 5% until all samples and SNPs had <5% missing data across the entire West African dataset.
Sites with ambiguous data were removed.
Sequences with missing data were removed from the database by manual inspection using MEGA4 v4.1, and redundant sequences were removed using the NRDB program (http://pubmlst.org/perl/mlstanalyse/mlstanalyse.pl?site=pubmlst&page=nrdb&referer=pubmlst.org).org
Subjects with missing data were removed from analysis.
Loci with missing data were removed before analysis.
Sites with ambiguous data were removed (cleandata = 1).
Cases with missing data were removed from the rates and regression calculations.
Subjects with missing data were removed from the sample, further reducing the sample size to 1,463 subjects.
The relationship between pre-, post- and follow-up attitude scores became only slightly significant when all cases with missing data were removed (p = 0.044).
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