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The data were ordered by computing trees using several approaches: neighbor-joining, maximum parsimony (heuristic search with 100 random-addition sequences and the TBR branch-swapping algorithm; Figure 3a) and maximum likelihood (Figrue 3b).
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For the latter, data are ordered by increasing HIM value and binned, such that each bin has approximately the same number of data.
The K = 7 grouping is less reproducible than that for K = 3 so the former data are ordered by the average of the 3 most consistent runs and there are many admixed accessions in the former run with no dominant progenitor and consequently no Sub-Group assignation (top sectors of 3C).
Data sets were ordered by under- or overexpression: P-value of integrin analyzed.
The genes and arrays in the resulting data tables were ordered by their patterns of gene expression and visualized using Treeview software.
Per data set the genes were ordered by their variance across the patient samples, and the top 80%% were used to calculate Spearman's rank correlations per row using the Python scipy.stats package.
In IDCT computation sequence data is ordered in V k order then multiplied by coefficients in the next stage.
Therefore, should one be interested exclusively in targeted therapy for uveal melanoma, data must be ordered by column "Notes": this way the information contained in this column is rearranged in the alphabetical order and data on uveal melanoma will appear towards the end of the database as a sequence of rows tagged by the expression "Uveal melanoma" written in the column "Notes".
Data can be ordered by upload or modification date, providing a chronological view of acquisition.
The motif sequence data sets are ordered by protein recommended names and BH motifs.
The theoretical perplexities which have confronted the new non-anthropocentric and non-geocentric (or heliocentric) science because its data refuse to be ordered by any of the natural mental categories of the human brain are well enough known.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com