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RNA-Seq data were mapped against the nucleotide CDS reference library; exome sequencing and WGS data were mapped against the genomic nucleotide reference library.
The 454 shotgun and paired-end sequencing data were mapped against the Akkermansia muciniphila genome.
For the nuclear genome, sequence data were mapped against the nuclear genome of O. sativa subsp. japonica cv.
Genomic data from the Sylvio X10 draft assembly, and from reconstructed transcripts from the TcAdriana 454 RNA-seq data were mapped against these CL-Brener reference alignments.
Key categories identified in our data were mapped against reasons for non-use of assistance as reported in the smoking cessation literature (table 2).
The 454 shotgun (122,354 reads) and paired-end sequencing (268,104 reads) data were mapped against the Akkermansia muciniphila (ATCC BAA-835) genome using CLC workbench software (CLC bio, Aarhus, Denmark).
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Sequencing data was mapped against the published C. autoethanogenum sequence available in the NCBI database (GenBank: CP006763) using the program CLC Genomics Workbench (CLC Bio; Qiagen).
Data were mapped using an in-house pipeline.
When Oakland PD's crime data is mapped and compared against the intensity of ALPR readings, it is seen that low-income neighborhoods are also hotspots for crime, which explains why there is more police patrol in these areas.
Sequence data from the SOLiD sequencer were mapped against the previously created consensus.
For characterizing the diversity of Desulfobulbaceae contained in the single filament data sets, trimmed Ion Torrent reads were mapped against the SILVA nonredundant 16S rRNA reference database, Release 119 using BBmap 34.94 (http://sourceforge.net/projects/bbmap/).net/projects/bbmap/
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