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Reads from ChIP-Seq data were aligned to mouse mm9 assembly using Bowtie alignment [ 93] by suppressing alignments to only 1 best reportable alignment with a maximum number of 2 mismatches within 28 nucleotides in the high quality sequencing end.
The data were aligned to the reference using the Burrow-Wheeler alignment tool BWA (69, 70).
These data were aligned to the human genome by using the BioScope aligner.
1) RNA-seq data were aligned to the A. cerana reference genome using the spliced aligner Tophat [ 46] (with --no-discordant, −-no-mixed parameters) and then assembled using Cufflinks [ 47] (with parameters -u --library-type fr-unstranded).
The STAT6 read data were aligned to the human reference genome (NCBI v36) using the short oligonucleotide alignment program SOAP [ 16].
Sequence data were aligned to the reference genome, NC_001320.
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The male and female sequence data is aligned to the reference sequences using the ultrafast read aligner Bowtie [ 38].
The RNA-seq raw data was aligned to the reference genome (hg19) (Trapnell et al., 2009).
The deformation fields were then applied to the corresponding PET images obtained at t 1 and t 2 (steps C and D), respectively, so that all data are aligned to the t 3 images at the end of the process.
Data are aligned to the time of nosepoke (vertical line).
The human data was aligned to the GRCh37 (hgenomeenome.
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CEO of Professional Science Editing for Scientists @ prosciediting.com