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Analysis of these data was undertaken using proportional hazards (PH) models, comparing the time to the first confirmed bTB breakdown for herds recorded inside trial areas subjected to the proactive and survey-only treatments.
Analysis of quantitative data was undertaken using Excel.
The analysis of imaging data was undertaken using SPM5 (http://www.fil.ion.ucl.ac.uk/spm).ac.uk/spm
Bivariate analysis of these data was undertaken using Pearson's chi square tests.
Descriptive analysis of the survey data was undertaken using SPSS version 15 [ 25].
An analysis of GeneChip expression data was undertaken using R/Bioconductor.
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Comparisons of normally distributed data were undertaken using Student's t-test; the Wilcoxon rank-sum test was used for non-normally distributed data.
Comparisons of parametric data were undertaken using the unpaired Student's t-test with Benjamini-Hochberg correction for multiple comparisons [ 30].
The following data collection descriptive data analysis was undertaken using Microsoft Excel (2007).
12 Following the data collection and thematic analysis, descriptive data analysis was undertaken using Microsoft Excel.
The qualitative data analysis was undertaken using a computer assisted qualitative data analysis software: NVivo©.
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