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Expression and copy number data was integrated as follows: Affymetrix probe sets were mapped to Ensembl gene IDs or the base pair position given by Affymetrix, if no matching Ensembl gene id was found.
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The general approach is a meta strategy, wherein sequencing data are integrated as early as possible and in particular ways and wherein multiple assembly algorithms are judiciously applied such that the deficiencies in one are complemented by another.
SB severity data were integrated as a function of time to determine the area under the disease progress curve (AUDPC).
The residence times derived from the rat data were integrated as the area under the time-activity curve.
The sections were scored, and the resulting data were integrated as a mean for each specimen.
The resulting data were integrated as a mean for each specimen.
The HapMap data is integrated as a third group of information, since for SNPs it is not known whether the sample information is derived from a tumor or a normal sample.
To make the network more biologically significant, microarray data was integrated into the network as node weights.
As far as possible, PS data was integrated into national reporting structures and databases.
No individual patient data was integrated.
Curated data are integrated with each other as well as external data sets to facilitate development of novel hypotheses about chemical gene disease networks (1).
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CEO of Professional Science Editing for Scientists @ prosciediting.com