Sentence examples for data was assembled from inspiring English sources
The Illumina data was assembled with the Velvet assembler (version 0.7.55; [ 45]) with a hash length of 61 and the following options; -ins_length 250 -scaffolding no -exp_cov 16 -cov_cutoff 5, to produce an assembly with a final graph with 51765 nodes, n50 of 2413, max 22432, total 37740533, using 73178660/94020728 reads.
The data was assembled using a de novo assembly approach using both pcap [ 23] and newbler (Roche 454 software package) assembly algorithms to assemble the data.
High-throughput genome sequencing was performed using a HiSeq 2500 machine (Illumina, San Diego, CA), and the 100 bp short read paired-end data was assembled using the de novo assembly algorithm, Velvet (Zerbino and Birney 2008; version 1.2.08).
The resulting sequence data was assembled using the manufacturer supplied Newbler assembler followed by clustering using Phrap [38].
Quality-passed data was assembled using the de novo genome assembler AllpathsLG [ 57].
The RNA-seq data was assembled de novo with the Trinity assembler to create a reference gene set to which the reads were mapped in order to obtain differentially expressed genes (DEGs) between the drought and WW conditions.
Sequence data were assembled using NewBler assembler and Consed.
The GS FLX sequence data were assembled using Newbler assembly software.
Sequence data were assembled using the PHRAP program (University of Washington, Seattle, WA, USA).
Mapped RNA-seq data were assembled with Cufflinks v2.2.0100 using Physcomitrella patens genome version 1.6.
