Sentence examples for data trimmed from inspiring English sources
Results of physical activity data (trimmed) as self-reported on the International Physical Activity Questionnaire IPAQQ) [ 20, 21] are presented in Table 4.
Our investigation concerns five normalization methods widely used for normalization of RNA-seq data: Trimmed Mean of M-values, Upper Quartile, Median, Quantile, and PoissonSeq normalization implemented in R packages edgeR (v3.2.4), DESeq (v1.12.1), EBSeq (v1.3.1), and PoissonSeq 3 (v1.1.2), respectively.
To confirm this and compare the results using different datasets from same seven RNA-Seq data before and after data processing, three datasets (the raw data, trimmed raw data, and trimmed raw data with duplicate reads removed) were then separately used for de novo assembly (Additional file 1).
If ERAP1, as suggested by our data, trims peptides at dramatically different rates depending on their internal sequence and this also applies inside the cell, it would not be surprising that ERAP1 down-regulation would lead to different effects depending on the epitope studied.
These genes can be easily eliminated during data trimming process.
After data trimming and filtering, 2,658 million clean reads remained, representing ∼231 Gb of sequences.
The sequence duplication level did not change after data trimming although the sequence length was shortened.
Details on results of data trimming and mapping are reported in Supplementary Dataset S1.
An important aside here is that the iterations showed the effects of data trimming on the final estimates and, hence, uncovered AR-DRG with weights that were highly sensitive to the data trimming algorithm used.
156 million reads generated from 7 samples were then used for de novo assembly after data trimming.
Sequence data trimming, filtering, annotation and assembly: Quality trimming and filtering of Illumina reads was performed as described previously (Brown et al., 2012b).
