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Three DCIS samples were removed from analysis in the quality assessment and control steps of methylation data processing detailed below.
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We discuss the data processing details, including the effect of different prior values for the stations and the optimal solution.
We show the onboard data processing details in "Features of the PWE functions" section and further specifications of the onboard software are presented in Matsuda et al. (2018).
Additional data processing details are available in the Supplemental Experimental Procedures.
This chromatic pupillometer, stimulus calibration, light safety issues and data processing details have been previously described [ 35].
In the final section, the crystallization and data processing are detailed.
A multistage clustering and data processing method, SWIFT (detailed in a companion manuscript), has been developed to detect rare subpopulations in large, high-dimensional flow cytometry datasets.
We attempt to mitigate this with the non-causal (NC) pruning and data processing inequality steps detailed later in this section.
This general formula formed the bases of all our data processing; the details of calculations are summarized in Table 6.
The data processing procedure (which is detailed in Additional file 2: Supplementary Methods) was divided into four steps: data filtering and normalization, probe spot calibration, gene probe statistical analysis, and isoform analysis.
The data processing filters (for details see Materials and Methods) did not result in a systematic loss of data points (number of genes with useful ratios) upon increasing temperatures.
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