This subclass therefore includes passport information on germplasm, management-related data and specific attributes, including technical terms used by genebanks to describe, for example, a single seed sample or plant clone.
Six genetic maps are currently recorded in the banana module, as well as one genotyping study, and microsatellites data on 541 germplasm samples covering a wide range of Musa genetic diversity (42).
Nipponbare) and a rapidly increasing volume of whole-genome resequencing data on representative germplasm diversity panel across the genus, one important feature that needs to be defined for a biologically meaningful interrogation of protein-coding genes is the proximal regulatory region or 'core promoter'.
Because SNP data on the germplasm collection were not yet available at the time when entries were selected, genetic diversity was estimated by considering country and province of origin in proportion to the number of entries from that source in the germplasm collection.
If from a hybrid accession, provide information on germplasm resources of the parents 4.
In addition, multi-crop passport terms are included as controlled vocabularies for sharing information on germplasm.
We are developing a database to provide access to the SNP diversity data on our panel of germplasm (44,100 SNP genotypes × 500 rice accessions); the data will be available for download from our project web site (www.ricediversity.org) and through the Gramene database (www.gramene.org).org
Recent data on molecular comparisons using germplasm collections clearly show that the B genome could be related to several Ae. speltoides lines but not to other species of the Sitopsis section [ 25, 49].
The frequency of one SNP every 169 bp of coding and every 89 bp in non-coding regions in the wild forms of V. vinifera were not comparable to a previous study of 9 V. vinifera cultivars and 2 wild forms of V. vinifera [ 27], emphasizing the dependency of these types of data on the chosen set of germplasm.
Alternatively, when focusing only on germplasm screening, up to 52 successive phenotypic assays can be conducted within 12 months.
