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(b) The simulated voltage waveforms of DIN, WR, RD, and DOUT that are the input data of the write driver, write command signal, read command signal, and output data of the read circuit, respectively.
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We apply PoolHap to the mixture of a subset of real data of the reads described before.
The type of sequencer is immaterial, providing that the data format of the reads is followed.
A smooth graph will indicate the desired characteristics of the read data, while fragmented patterns indicate a problem.
Two different types of analyses of the read data were performed.
The rest of the read data were of low quality and could not be aligned to the sequence.
The first step in processing the data is trimming of the reads.
Review of the quality control data from the reading center shows an appropriate degree of reproducibility.
The Kaplan and Weiner data provided the 5' ends of the reads with directionality while the Mavrich data provided the nucleosome midpoints.
Due to the massive amount of raw data, the reads were first digitally normalized using Khmer [ 27, 28].
To assess the quality of the RNA-seq data, the reads were mapped to the N. tabacum reference genome.
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