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The data of sequence preferences for nucleosomes were taken from Segal et al. [ 15], which were normalized, such that their values are between 0 and 1.
The data of sequence preferences for nucleosomes were taken from Segal et al. [ 36] and Lee et al. [ 34], which were normalized, such that their values are between 0 and 1.
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Graphical data of sequencing results were analyzed by Chromas Version 1.4.5.
Data of sequences were analyzed by the software Genetool lite version 1.0.
The original data of sequencing short reads, the assembled sequence and the SNP data of each accession can be downloaded.
In total, we generated 4.16 Gb of data of sequencing reads ranging from 40 to 1196 bp.
Therefore, we treat the experimental interaction data as evolutionary information independent of sequence data.
In order to assess functional divergence, we generated two control data sets of sequence pairs.
A total of 2980 Mb and 5240 Mb raw sequence data consisting of sequence reads of 75 bp in length were obtained from ZP and ZH, respectively.
Independent test data consisted of sequences and binding data for peptides of length ≤25.
Training data consisted of sequences and binding data for nonamer (nine amino acid) peptides.
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